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-.PHONY : queue.c.s
-
-simulateFlux.o: simulateFlux.c.o
-
-.PHONY : simulateFlux.o
-
-# target to build an object file
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-	$(MAKE) $(MAKESILENT) -f CMakeFiles/exect.dir/build.make CMakeFiles/exect.dir/simulateFlux.c.o
-.PHONY : simulateFlux.c.o
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-simulateFlux.i: simulateFlux.c.i
-
-.PHONY : simulateFlux.i
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-# target to preprocess a source file
-simulateFlux.c.i:
-	$(MAKE) $(MAKESILENT) -f CMakeFiles/exect.dir/build.make CMakeFiles/exect.dir/simulateFlux.c.i
-.PHONY : simulateFlux.c.i
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-simulateFlux.s: simulateFlux.c.s
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-.PHONY : simulateFlux.s
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-	$(MAKE) $(MAKESILENT) -f CMakeFiles/exect.dir/build.make CMakeFiles/exect.dir/simulateFlux.c.s
-.PHONY : simulateFlux.c.s
-
-# Help Target
-help:
-	@echo "The following are some of the valid targets for this Makefile:"
-	@echo "... all (the default if no target is provided)"
-	@echo "... clean"
-	@echo "... depend"
-	@echo "... edit_cache"
-	@echo "... rebuild_cache"
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-	@echo "... power.o"
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Code-C/average.c

@@ -13,12 +13,12 @@ void averageCalculation(long **p, double averageArray[]){
     for(int i = 1; i < nCol; i++){
         int j = 0;
         averageArray[i] = 0;
-        while(j < nRow -1){
+        while(j < nRowRawData){
             averageArray[i] += p[i][j];
             j++;
         }
-        averageArray[i] /= nRow;
+        //printf("%f , %f\n", averageArray[i] , averageArray[i] / nRowRawData);
-        //printf("%f\n", powerArray[i]);
+        averageArray[i] /= nRowRawData;
     }
 }
 
@@ -27,12 +27,19 @@ void averageCalculation(long **p, double averageArray[]){
  * 
  * @param rawDataFileName name of the raw data file to use to realize the calcul
  */
-void averageThreadFunction(char* rawDataFileName){
+void averageFunction(char* rawDataFileName , double **aver){
     long **p = getRawDataArray(rawDataFileName);
-    double aver[nCol -1];
+    double averN[nCol -1];
     if(p !=NULL){
-        averageCalculation(p,aver);
+        if(p !=NULL){
-        appendDataInFile("averageData.csv",aver,nCol-1);
+            if(aver == NULL){
-        freeArray(p,nRow);
+                averageCalculation(p,averN);
+                appendDataInFile("averageData.csv",averN,nCol-1);
+            }else{
+                averageCalculation(p,aver[1]);
+                appendDataInFile("averageData.csv",aver[1],nCol-1);
+            }
+        freeArray(p,nRowRawData);
+    }
     }
 }

Code-C/average.h

@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void averageThreadFunction(char* rawDataFileName);
+void averageFunction(char* rawDataFileName , double **aver);

Code-C/getArray.c

@@ -3,7 +3,7 @@
 #include "initialParameters.h"
 //#include <string.h>
 
-long **get(int N, int M) /* Allocate the array */
+long **getlongArray(int N, int M) /* Allocate the array */
 {
     /* Check if allocation succeeded. (check for NULL pointer) */
     int i;
@@ -14,6 +14,17 @@ long **get(int N, int M) /* Allocate the array */
     return array;
 }
 
+double **getDoubleArray(int N, int M) /* Allocate the array */
+{
+    /* Check if allocation succeeded. (check for NULL pointer) */
+    int i;
+    double **array;
+    array = (double **) malloc(N*sizeof(double *));
+    for(i = 0 ; i < N ; i++)
+        array[i] = (double *) malloc( M*sizeof(double));
+    return array;
+}
+
 void fillArrayWithRawData(char *rawDataFileName,long** p, int N, int M) {
     int i, j;
     char *buffer;
@@ -42,7 +53,7 @@ void printArrayData(long** p, int N, int M) {
     for(i = 0 ; i < N ; i++){
         printf("line n°%d : " , i);
         for(int j = 0 ; j < M ; j++){
-            printf("%d , " , p[i][j]);
+            printf("%ld , " , p[i][j]);
             if(j==(M-1)) printf("\n");
         }
     }
@@ -86,8 +97,8 @@ void freeArray(long **p, int N) {
  */
 long **getRawDataArray(char* rawDataFileName){
     long **p;
-    p = get(nRow, nCol);
+    p = getlongArray(nRowRawData, nCol);
-    fillArrayWithRawData(rawDataFileName,p ,nRow, nCol);
+    fillArrayWithRawData(rawDataFileName,p ,nRowRawData, nCol);
     //if(checkArrayFullyFill(p,nRow)){
         //clearRawData(N);
         return p;

Code-C/getArray.h

@@ -9,3 +9,4 @@ long **getRawDataArray(char *rawDataFileName);
 void printArrayData(long** p, int N, int M);
 void freeArray(long **p, int N);
 bool checkArrayFullyFill(long **p, int N );
+double **getDoubleArray(int N, int M);

Code-C/growthRate.c

@@ -9,16 +9,28 @@
  * @param gRateArray array that contaigns results of the growth ratecalculation
  */
 void growthRateCalculation(double **dataArray , double *gRateArray){
-    double gRate = 0;
     for(int i = 0 ; i < nCol-1 ; i++){
-        gRate = (dataArray[1][i] - dataArray[2][i]) / period;
+        gRateArray[i] = (dataArray[0][i] - dataArray[1][i]) / period;
     }
 }
-
+/**
-void growthRateFunction(double *dataLign){
+ * @brief calcul then print differentiate in csv
-    double **dataArray;
+ * 
-    //initialization + fill
+ * @param dataLign 
+ */
+void growthRateFunction(double **dataLign , char* fileName){
     double gRateArray[nCol-1];
-    growthRateCalculation(dataArray , gRateArray);
+    growthRateCalculation(dataLign , gRateArray);
-    appendDataInFile("growthRate.csv",gRateArray , nCol-1);
+    appendDataInFile(fileName,gRateArray , nCol-1);
+}
+
+void sumColArray(long **p, double res[] , int N , int M){
+    for(int i = 1; i < M; i++){
+        int j = 0;
+        res[i] = 0;
+        while(j < N){
+            res[i] += p[i][j];
+            j++;
+        }
+    }
 }

Code-C/growthRate.h

@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void growthRateFunction(double *dataLign);
+void growthRateFunction(double **dataLign , char* fileName);

Code-C/initialParameters.h

@@ -2,12 +2,15 @@
 #include "queue.h"
 
 extern bool rawDataWriteFlag;
-extern int nRow;
+extern int nRowRawData;
+extern int nRowGR;
 extern int nCol;
 extern double freqEch;
+extern int nbRowBinFile;
+extern int nbRowIgnore;
 
 extern int cptFile;
-
+extern int cptValue;
 extern double period;
 extern double invTimeBandWidth;
 

Code-C/main.c

@@ -6,18 +6,24 @@
 #include "queue.h"
 #include "average.h"
 #include "growthRate.h"
+#include "getArray.h"
 
 bool rawDataWriteFlag;
-int nRow = 500;
+int nRowRawData = 500;
+int nRowGR = 150;
 int nCol = 1;
 double freqEch = 250;
 
-Pqueue firstRawDataQueue;
+int nbRowBinFile = 900011;
+int nbRowIgnore = 19;
 
+Pqueue firstRawDataQueue;
+//Captor                     1    2    3     4     5     6    7     8
 bool selectionCaptors[] = {true,false,true,false,false,false,true,false};
 
 int cptData = 0; 
 int cptFile = 1;
+int cptValue = 0;
 
 double period = 0;
 double invTimeBandWidth = 0;
@@ -42,7 +48,7 @@ void *threadCalculAverage(void *vargp){
         while(queueGetNextE(rawDataQueue) != NULL){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
-            averageThreadFunction(fileName);
+            averageFunction(fileName, NULL);
             remove(fileName);
         }
     }
@@ -56,7 +62,7 @@ void *threadCalculBoth(void *vargp){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
             powerFunction(fileName, NULL);
-            averageThreadFunction(fileName);
+            averageFunction(fileName , NULL);
             remove(fileName);
         }
     }
@@ -66,17 +72,17 @@ void *threadCalculGrowthRate(void * vargp){
     Pqueue rawDataQueue = firstRawDataQueue;
     char* fileName;
     //double pw[nCol-1];
-    double *dataLign[2][nCol-1];
+    double **dataLignPw = getDoubleArray(2,nCol);
+    double **dataLignAv = getDoubleArray(2,nCol);
+
     int i = 0;
     while(rawDataWriteFlag){
-        //add case first file traitement 
-        //(possibility 1: call twice powerfunction , following while strat after 2 file encountered)
-        //(posibilty 2 : initialiaze with a 0-fill array, move ligns for first encounter then let the following whil e do the job)
         while(queueGetNextE(rawDataQueue) != NULL){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
             if(i < 2){
                 if(i == 1){
+<<<<<<< HEAD
                     printf("zedfghjio\n");
                     powerFunction(fileName, dataLign[1]);
                     growthRateFunction(**dataLign);
@@ -84,16 +90,33 @@ void *threadCalculGrowthRate(void * vargp){
                                         printf("zedfghjio\n");
 
                     powerFunction(fileName, dataLign[0]);
+=======
+                    powerFunction(fileName, dataLignPw);
+                    averageFunction(fileName , dataLignAv);
+                    growthRateFunction(dataLignPw , "growthRatePw.csv");
+                    growthRateFunction(dataLignPw,"growthRateAv.csv");
+                }else{
+                    averageFunction(fileName , dataLignAv);
+                    powerFunction(fileName, dataLignPw);
+>>>>>>> e06c7602e0dade3bd0d2e88e88cacaab8de6f9ea
                 }
                 i++;
             }else{
                 for(int y = 0; y < (nCol-1); y++){
-                    dataLign[0][y] = dataLign[1][y];
+                    dataLignPw[0][y] = dataLignPw[1][y];
+                    dataLignAv[0][y] = dataLignAv[1][y];
                 }
+<<<<<<< HEAD
                                     printf("zedfghjio\n");
 
                 powerFunction(fileName, dataLign[1]);
                 growthRateFunction(**dataLign);
+=======
+                powerFunction(fileName, dataLignPw);
+                averageFunction(fileName , dataLignAv);
+                growthRateFunction(dataLignPw,"growthRatePw.csv");
+                growthRateFunction(dataLignPw,"growthRateAv.csv");
+>>>>>>> e06c7602e0dade3bd0d2e88e88cacaab8de6f9ea
             }
             remove(fileName);
         }
@@ -111,7 +134,7 @@ int main(int argc , char** argv){
     rawDataWriteFlag = true;
 
     period = 1 / freqEch;
-    invTimeBandWidth = 1 /(nRow * period);
+    invTimeBandWidth = 1 /(nRowRawData * period);
     firstRawDataQueue = queueCreateEmpty(); // change this for create empty
 
     pthread_t rawData;

Code-C/power.c

@@ -11,16 +11,17 @@
  * @param powerArray array where results are stocked
  */
 void powerCalculation(long **p, double powerArray[]){
-    for(int i = 1; i < nCol; i++){
+    for(int i = 0; i < nCol; i++){
         int j = 0;
         powerArray[i] = 0;
-        while(j < nRow-1){
+
-            double aire  = ( pow(p[j][i],2) + pow(p[j+1][i],2) ) / 2 * period;
+        while(j < nRowRawData){
-            powerArray[i] += aire;
+            powerArray[i] += pow(p[j][i+1],2);
             j++;
         }
-        powerArray[i] *= invTimeBandWidth;
+        powerArray[i] /= nRowRawData;
     }
+
 }
 
 /**
@@ -39,9 +40,9 @@ void powerFunction(char* rawDataFileName, double **pw){
             powerCalculation(p,pww);
             appendDataInFile("powerData.csv",pww,nCol-1);
         }else{
-            powerCalculation(p,*pw);
+            powerCalculation(p,pw[1]);
-            appendDataInFile("powerData.csv",*pw,nCol-1);
+            appendDataInFile("powerData.csv",pw[1],nCol-1);
         }
-        freeArray(p,nRow);
+        freeArray(p,nRowRawData);
     }
 }

Code-C/power.h

@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void powerFunction(char* rawDataFileName, double **pw);
+void powerFunction(char* rawDataFileName, double *pw[]);

Code-C/simulateFlux.c

@@ -93,6 +93,7 @@ int lastIndexCaptor(){
     }
     return lastIndex;
 }
+
 /**
  * @brief write one lign of rawData in the file @param rawDataFile (simulate of freq of the Vegetal Signals Captor)
  * 
@@ -108,40 +109,51 @@ bool writeOneRawData(FILE *rawDataFile){
     quartet value;
 
     if(fread(&buff, 26, 1, stdin)) {
-        fprintf(rawDataFile , "%d,", millis());
+        //printf("%d\n",cptValue);
-        if (strncmp(buff, "#################\n", (size_t)18) == 0) {
+        if(cptValue < nbRowBinFile - nbRowIgnore){
-            if (!(fread(&buff2, 18, 1, stdin))) {
+            FILE *timeFile = fopen("timeFile.csv" , "a+");
-                fprintf(stderr, "Erreur lecture après ###...#");
+            fprintf(timeFile , "%ld\n", millis());
-            } else {
+            fclose(timeFile);
-                strncpy(buff, &buff[18], 8);
+            fprintf(rawDataFile , "%ld,", millis());
-                strncpy(&buff[8], buff2, 18);
+            if (strncmp(buff, "#################\n", (size_t)18) == 0) {
-            }
+                if (!(fread(&buff2, 18, 1, stdin))) {
-        }
+                    fprintf(stderr, "Erreur lecture après ###...#");
-        int lastIndex = lastIndexCaptor();
+                } else {
-        for (int i = 1; i < 9; i++){
+                    strncpy(buff, &buff[18], 8);
-            if(selectionCaptors[i]){
+                    strncpy(&buff[8], buff2, 18);
-                value.octet1 = buff[3*i+1];
-                value.octet2 = buff[3*i+2];
-                value.octet3 = buff[3*i+3];
-                value.octet4 = 0;
-                
-                valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
-                memcpy(&values[i], &valbin[i], sizeof(uint32_t));
-
-                if(i==lastIndex){
-                    fprintf(rawDataFile, "%d\n", values[i]/256);
-                }
-                else{
-                    fprintf(rawDataFile, "%d,", values[i]/256);
                 }
             }
+            int lastIndex = lastIndexCaptor();
+            for (int i = 1; i < 9; i++){
+                if(selectionCaptors[i-1]){
+                    value.octet1 = buff[3*i+1];
+                    value.octet2 = buff[3*i+2];
+                    value.octet3 = buff[3*i+3];
+                    value.octet4 = 0;
+                    
+                    valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
+                    memcpy(&values[i], &valbin[i], sizeof(uint32_t));
+                    FILE* allRawDataFile = fopen("AllRawData.csv" , "a+");
+                    if(i-1==lastIndex){
+                        fprintf(rawDataFile, "%d\n", values[i]/256);
+                        fprintf(allRawDataFile, "%d\n", values[i]/256);
+                    }
+                    else{
+                        fprintf(rawDataFile, "%d,", values[i]/256);
+                        fprintf(allRawDataFile, "%d,", values[i]/256);
+                    }
+                    fclose(allRawDataFile); 
+                }
+            }
+        cptData++;
+        //sleep(0.004); //simul freq here
+
+        cptValue++;
+        return true;
+        } 
+        else {
+            return false;
         }
-    cptData++;
-    //sleep(0.004); //simul freq here
-    return true;
-    } 
-    else {
-        return false;
     }
 }
 
@@ -151,7 +163,7 @@ void *threadSimulateFlux(void *vargp){
     FILE *rawDataFile = fopen(fileName,"w+");
 
     while(writeOneRawData(rawDataFile)){
-        if(cptData == nRow){
+        if(cptData == nRowRawData){
             fclose(rawDataFile);
             cptData = 0;
             cptFile++;