From e23d744cdc5b66a309b20167742b132efb00e4be Mon Sep 17 00:00:00 2001
From: "quentin.perret" <quentinprrt33@gmail.com>
Date: Thu, 16 Jun 2022 14:35:02 +0200
Subject: [PATCH 1/5] beginning change power

---
 Code-C/getArray.c     |  15 +++++++++++++--
 Code-C/getArray.h     |   3 ++-
 Code-C/growthRate.c   |  15 ++++++++-------
 Code-C/growthRate.h   |   2 +-
 Code-C/main           | Bin 0 -> 41872 bytes
 Code-C/main.c         |  23 +++++++++++------------
 Code-C/power.c        |  15 ++++++++++-----
 Code-C/power.h        |   2 +-
 Code-C/simulateFlux.c |   4 ++--
 9 files changed, 48 insertions(+), 31 deletions(-)
 create mode 100755 Code-C/main

diff --git a/Code-C/getArray.c b/Code-C/getArray.c
index eeaac8e..7284378 100644
--- a/Code-C/getArray.c
+++ b/Code-C/getArray.c
@@ -3,7 +3,7 @@
 #include "initialParameters.h"
 //#include <string.h>
 
-long **get(int N, int M) /* Allocate the array */
+long **getlongArray(int N, int M) /* Allocate the array */
 {
     /* Check if allocation succeeded. (check for NULL pointer) */
     int i;
@@ -14,6 +14,17 @@ long **get(int N, int M) /* Allocate the array */
     return array;
 }
 
+double **getDoubleArray(int N, int M) /* Allocate the array */
+{
+    /* Check if allocation succeeded. (check for NULL pointer) */
+    int i;
+    double **array;
+    array = (double **) malloc(N*sizeof(double *));
+    for(i = 0 ; i < N ; i++)
+        array[i] = (double *) malloc( M*sizeof(double));
+    return array;
+}
+
 void fillArrayWithRawData(char *rawDataFileName,long** p, int N, int M) {
     int i, j;
     char *buffer;
@@ -86,7 +97,7 @@ void freeArray(long **p, int N) {
  */
 long **getRawDataArray(char* rawDataFileName){
     long **p;
-    p = get(nRow, nCol);
+    p = getlongArray(nRow, nCol);
     fillArrayWithRawData(rawDataFileName,p ,nRow, nCol);
     //if(checkArrayFullyFill(p,nRow)){
         //clearRawData(N);
diff --git a/Code-C/getArray.h b/Code-C/getArray.h
index 02810a9..a53bd0c 100644
--- a/Code-C/getArray.h
+++ b/Code-C/getArray.h
@@ -8,4 +8,5 @@
 long **getRawDataArray(char *rawDataFileName);
 void printArrayData(long** p, int N, int M);
 void freeArray(long **p, int N);
-bool checkArrayFullyFill(long **p, int N );
\ No newline at end of file
+bool checkArrayFullyFill(long **p, int N );
+double **getDoubleArray(int N, int M);
\ No newline at end of file
diff --git a/Code-C/growthRate.c b/Code-C/growthRate.c
index c381864..8fcca10 100644
--- a/Code-C/growthRate.c
+++ b/Code-C/growthRate.c
@@ -9,16 +9,17 @@
  * @param gRateArray array that contaigns results of the growth ratecalculation
  */
 void growthRateCalculation(double **dataArray , double *gRateArray){
-    double gRate = 0;
     for(int i = 0 ; i < nCol-1 ; i++){
-        gRate = (dataArray[1][i] - dataArray[2][i]) / period;
+        gRateArray[i] = (dataArray[0][i] - dataArray[1][i]) / period;
     }
 }
-
-void growthRateFunction(double *dataLign){
-    double **dataArray;
-    //initialization + fill
+/**
+ * @brief calcul then print differentiate in csv
+ * 
+ * @param dataLign 
+ */
+void growthRateFunction(double **dataLign){
     double gRateArray[nCol-1];
-    growthRateCalculation(dataArray , gRateArray);
+    growthRateCalculation(dataLign , gRateArray);
     appendDataInFile("growthRate.csv",gRateArray , nCol-1);
 }
\ No newline at end of file
diff --git a/Code-C/growthRate.h b/Code-C/growthRate.h
index 1e0b201..7979f21 100644
--- a/Code-C/growthRate.h
+++ b/Code-C/growthRate.h
@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void growthRateFunction(double *dataLign);
\ No newline at end of file
+void growthRateFunction(double **dataLign);
\ No newline at end of file
diff --git a/Code-C/main b/Code-C/main
new file mode 100755
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literal 0
HcmV?d00001

diff --git a/Code-C/main.c b/Code-C/main.c
index 1bacd00..1a42c18 100644
--- a/Code-C/main.c
+++ b/Code-C/main.c
@@ -6,14 +6,15 @@
 #include "queue.h"
 #include "average.h"
 #include "growthRate.h"
+#include "getArray.h"
 
 bool rawDataWriteFlag;
-int nRow = 500;
+int nRow = 4;
 int nCol = 1;
 double freqEch = 250;
 
 Pqueue firstRawDataQueue;
-
+//Captor                     1    2    3     4     5     6    7     8
 bool selectionCaptors[] = {true,false,true,false,false,false,true,false};
 
 int cptData = 0; 
@@ -66,31 +67,29 @@ void *threadCalculGrowthRate(void * vargp){
     Pqueue rawDataQueue = firstRawDataQueue;
     char* fileName;
     //double pw[nCol-1];
-    double *dataLign[2][nCol-1];
+    double **dataLign = getDoubleArray(2,nCol);
+
     int i = 0;
     while(rawDataWriteFlag){
-        //add case first file traitement 
-        //(possibility 1: call twice powerfunction , following while strat after 2 file encountered)
-        //(posibilty 2 : initialiaze with a 0-fill array, move ligns for first encounter then let the following whil e do the job)
         while(queueGetNextE(rawDataQueue) != NULL){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
             if(i < 2){
                 if(i == 1){
-                    powerFunction(fileName, dataLign[1]);
-                    growthRateFunction(**dataLign);
+                    powerFunction(fileName, dataLign);
+                    growthRateFunction(dataLign);
                 }else{
-                    powerFunction(fileName, dataLign[0]);
+                    powerFunction(fileName, dataLign);
                 }
                 i++;
             }else{
                 for(int y = 0; y < (nCol-1); y++){
                     dataLign[0][y] = dataLign[1][y];
                 }
-                powerFunction(fileName, dataLign[1]);
-                growthRateFunction(**dataLign);
+                powerFunction(fileName, dataLign);
+                growthRateFunction(dataLign);
             }
-            remove(fileName);
+            //remove(fileName);
         }
     }
 }
diff --git a/Code-C/power.c b/Code-C/power.c
index 8f80d43..836bf0c 100644
--- a/Code-C/power.c
+++ b/Code-C/power.c
@@ -11,16 +11,21 @@
  * @param powerArray array where results are stocked
  */
 void powerCalculation(long **p, double powerArray[]){
+    printArrayData(p,nRow,nCol);
+    printf("data in pw : \n");
     for(int i = 1; i < nCol; i++){
         int j = 0;
         powerArray[i] = 0;
-        while(j < nRow-1){
-            double aire  = ( pow(p[j][i],2) + pow(p[j+1][i],2) ) / 2 * period;
-            powerArray[i] += aire;
+
+        while(j < nRow){
+
+            printf("%d , %d , %d , %d\n" , p[j][i], p[j+1][i] , i  ,j);
+            powerArray[i] + pow(p[j][i],2);
             j++;
         }
         powerArray[i] *= invTimeBandWidth;
     }
+
 }
 
 /**
@@ -30,7 +35,7 @@ void powerCalculation(long **p, double powerArray[]){
  * @param N number of rows in the file
  * @param M number of columns in the file
  */
-void powerFunction(char* rawDataFileName, double **pw){
+void powerFunction(char* rawDataFileName, double *pw[]){
     long **p = getRawDataArray(rawDataFileName);
     double pww[nCol-1];
     if(p !=NULL){
@@ -38,7 +43,7 @@ void powerFunction(char* rawDataFileName, double **pw){
             powerCalculation(p,pww);
             appendDataInFile("powerData.csv",pww,nCol-1);
         }else{
-            powerCalculation(p,*pw);
+            powerCalculation(p,pw[1]);
             appendDataInFile("powerData.csv",*pw,nCol-1);
         }
         freeArray(p,nRow);
diff --git a/Code-C/power.h b/Code-C/power.h
index 043857c..e75d948 100644
--- a/Code-C/power.h
+++ b/Code-C/power.h
@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void powerFunction(char* rawDataFileName, double **pw);
\ No newline at end of file
+void powerFunction(char* rawDataFileName, double *pw[]);
\ No newline at end of file
diff --git a/Code-C/simulateFlux.c b/Code-C/simulateFlux.c
index 0016a69..9c0fbd9 100644
--- a/Code-C/simulateFlux.c
+++ b/Code-C/simulateFlux.c
@@ -119,7 +119,7 @@ bool writeOneRawData(FILE *rawDataFile){
         }
         int lastIndex = lastIndexCaptor();
         for (int i = 1; i < 9; i++){
-            if(selectionCaptors[i]){
+            if(selectionCaptors[i-1]){
                 value.octet1 = buff[3*i+1];
                 value.octet2 = buff[3*i+2];
                 value.octet3 = buff[3*i+3];
@@ -128,7 +128,7 @@ bool writeOneRawData(FILE *rawDataFile){
                 valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
                 memcpy(&values[i], &valbin[i], sizeof(uint32_t));
 
-                if(i==lastIndex){
+                if(i-1==lastIndex){
                     fprintf(rawDataFile, "%d\n", values[i]/256);
                 }
                 else{

From 479289a365cfbdeff8f93860c73e0efc89abc541 Mon Sep 17 00:00:00 2001
From: "quentin.perret" <quentinprrt33@gmail.com>
Date: Thu, 16 Jun 2022 14:44:31 +0200
Subject: [PATCH 2/5] vide

---
 Code-C/main    | Bin 41872 -> 41760 bytes
 Code-C/power.c |   5 ++---
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/Code-C/main b/Code-C/main
index 640008a6248823e31c5af521edcfbba984debc5d..6d59e32e3f66a3e78afe9c7a8bc3ed80f01272e4 100755
GIT binary patch
delta 6323
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diff --git a/Code-C/power.c b/Code-C/power.c
index 836bf0c..d4714c3 100644
--- a/Code-C/power.c
+++ b/Code-C/power.c
@@ -18,12 +18,11 @@ void powerCalculation(long **p, double powerArray[]){
         powerArray[i] = 0;
 
         while(j < nRow){
-
-            printf("%d , %d , %d , %d\n" , p[j][i], p[j+1][i] , i  ,j);
+            printf("%d , %d , %d , %d\n" , p[j][i] ,powerArray[i] ,  i  ,j);
             powerArray[i] + pow(p[j][i],2);
             j++;
         }
-        powerArray[i] *= invTimeBandWidth;
+        powerArray[i] /= nRow;
     }
 
 }

From efc3110b2da731d599128d3a9d1edf76effbabda Mon Sep 17 00:00:00 2001
From: "quentin.perret" <quentinprrt33@gmail.com>
Date: Thu, 16 Jun 2022 15:19:07 +0200
Subject: [PATCH 3/5] power debug (column = 0)

---
 Code-C/main    | Bin 41760 -> 41760 bytes
 Code-C/main.c  |   2 +-
 Code-C/power.c |   7 +++----
 3 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/Code-C/main b/Code-C/main
index 6d59e32e3f66a3e78afe9c7a8bc3ed80f01272e4..3cd197e6963024a135e688b05bc98a32ecf109a8 100755
GIT binary patch
delta 4244
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zKKq<|A8p;Lwr<rCXXf%SNRZn@@??6KGFN3(Ml;#Ro>dc+(I}Eubz*GS=?^x$J*8Rr
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zlRZUEi(=SPy0)lTzc)frT!R+o%X2d3lD*(sioL3SmDg(8xOffI)Ahw+EQZAVDE2AE
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diff --git a/Code-C/main.c b/Code-C/main.c
index 1a42c18..32e7fd7 100644
--- a/Code-C/main.c
+++ b/Code-C/main.c
@@ -9,7 +9,7 @@
 #include "getArray.h"
 
 bool rawDataWriteFlag;
-int nRow = 4;
+int nRow = 500;
 int nCol = 1;
 double freqEch = 250;
 
diff --git a/Code-C/power.c b/Code-C/power.c
index d4714c3..6fd69d1 100644
--- a/Code-C/power.c
+++ b/Code-C/power.c
@@ -11,15 +11,14 @@
  * @param powerArray array where results are stocked
  */
 void powerCalculation(long **p, double powerArray[]){
-    printArrayData(p,nRow,nCol);
     printf("data in pw : \n");
-    for(int i = 1; i < nCol; i++){
+    for(int i = 0; i < nCol; i++){
         int j = 0;
         powerArray[i] = 0;
 
         while(j < nRow){
-            printf("%d , %d , %d , %d\n" , p[j][i] ,powerArray[i] ,  i  ,j);
-            powerArray[i] + pow(p[j][i],2);
+            printf("\np[%d,%d] = %d\npwArray[%d] = %lf\n" , j,i,p[j][i+1],i,powerArray[i]);
+            powerArray[i] += pow(p[j][i+1],2);
             j++;
         }
         powerArray[i] /= nRow;

From 8ecdd376191c82b09472dc15cf72c549b223ea9c Mon Sep 17 00:00:00 2001
From: "quentin.perret" <quentinprrt33@gmail.com>
Date: Thu, 16 Jun 2022 17:05:12 +0200
Subject: [PATCH 4/5] growth ok

---
 Code-C/average.c           |  22 ++++++++++++++--------
 Code-C/average.h           |   2 +-
 Code-C/getArray.c          |   4 ++--
 Code-C/growthRate.c        |  15 +++++++++++++--
 Code-C/growthRate.h        |   2 +-
 Code-C/initialParameters.h |   3 ++-
 Code-C/main                | Bin 41760 -> 42008 bytes
 Code-C/main.c              |  30 +++++++++++++++++++-----------
 Code-C/power.c             |  12 +++++-------
 Code-C/simulateFlux.c      |   2 +-
 10 files changed, 58 insertions(+), 34 deletions(-)

diff --git a/Code-C/average.c b/Code-C/average.c
index e9d8706..8fef657 100644
--- a/Code-C/average.c
+++ b/Code-C/average.c
@@ -13,12 +13,11 @@ void averageCalculation(long **p, double averageArray[]){
     for(int i = 1; i < nCol; i++){
         int j = 0;
         averageArray[i] = 0;
-        while(j < nRow -1){
+        while(j < nRowRawData){
             averageArray[i] += p[i][j];
             j++;
         }
-        averageArray[i] /= nRow;
-        //printf("%f\n", powerArray[i]);
+        averageArray[i] /= nRowRawData;
     }
 }
 
@@ -27,12 +26,19 @@ void averageCalculation(long **p, double averageArray[]){
  * 
  * @param rawDataFileName name of the raw data file to use to realize the calcul
  */
-void averageThreadFunction(char* rawDataFileName){
+void averageFunction(char* rawDataFileName , double **aver){
     long **p = getRawDataArray(rawDataFileName);
-    double aver[nCol -1];
+    double averN[nCol -1];
     if(p !=NULL){
-        averageCalculation(p,aver);
-        appendDataInFile("averageData.csv",aver,nCol-1);
-        freeArray(p,nRow);
+        if(p !=NULL){
+            if(aver == NULL){
+                averageCalculation(p,averN);
+                appendDataInFile("averageData.csv",averN,nCol-1);
+            }else{
+                averageCalculation(p,aver[1]);
+                appendDataInFile("averageData.csv",aver[1],nCol-1);
+            }
+        freeArray(p,nRowRawData);
+    }
     }
 }
\ No newline at end of file
diff --git a/Code-C/average.h b/Code-C/average.h
index b130865..a121de4 100644
--- a/Code-C/average.h
+++ b/Code-C/average.h
@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void averageThreadFunction(char* rawDataFileName);
\ No newline at end of file
+void averageFunction(char* rawDataFileName , double **aver);
\ No newline at end of file
diff --git a/Code-C/getArray.c b/Code-C/getArray.c
index 7284378..f8c05ef 100644
--- a/Code-C/getArray.c
+++ b/Code-C/getArray.c
@@ -97,8 +97,8 @@ void freeArray(long **p, int N) {
  */
 long **getRawDataArray(char* rawDataFileName){
     long **p;
-    p = getlongArray(nRow, nCol);
-    fillArrayWithRawData(rawDataFileName,p ,nRow, nCol);
+    p = getlongArray(nRowRawData, nCol);
+    fillArrayWithRawData(rawDataFileName,p ,nRowRawData, nCol);
     //if(checkArrayFullyFill(p,nRow)){
         //clearRawData(N);
         return p;
diff --git a/Code-C/growthRate.c b/Code-C/growthRate.c
index 8fcca10..64a0a2e 100644
--- a/Code-C/growthRate.c
+++ b/Code-C/growthRate.c
@@ -18,8 +18,19 @@ void growthRateCalculation(double **dataArray , double *gRateArray){
  * 
  * @param dataLign 
  */
-void growthRateFunction(double **dataLign){
+void growthRateFunction(double **dataLign , char* fileName){
     double gRateArray[nCol-1];
     growthRateCalculation(dataLign , gRateArray);
-    appendDataInFile("growthRate.csv",gRateArray , nCol-1);
+    appendDataInFile(fileName,gRateArray , nCol-1);
+}
+
+void sumColArray(long **p, double res[] , int N , int M){
+    for(int i = 1; i < M; i++){
+        int j = 0;
+        res[i] = 0;
+        while(j < N){
+            res[i] += p[i][j];
+            j++;
+        }
+    }
 }
\ No newline at end of file
diff --git a/Code-C/growthRate.h b/Code-C/growthRate.h
index 7979f21..d68b096 100644
--- a/Code-C/growthRate.h
+++ b/Code-C/growthRate.h
@@ -1,4 +1,4 @@
 #include <math.h>
 #include <stdbool.h>
 
-void growthRateFunction(double **dataLign);
\ No newline at end of file
+void growthRateFunction(double **dataLign , char* fileName);
\ No newline at end of file
diff --git a/Code-C/initialParameters.h b/Code-C/initialParameters.h
index 96201f5..5403af0 100644
--- a/Code-C/initialParameters.h
+++ b/Code-C/initialParameters.h
@@ -2,7 +2,8 @@
 #include "queue.h"
 
 extern bool rawDataWriteFlag;
-extern int nRow;
+extern int nRowRawData;
+extern int nRowGR;
 extern int nCol;
 extern double freqEch;
 
diff --git a/Code-C/main b/Code-C/main
index 3cd197e6963024a135e688b05bc98a32ecf109a8..d9efec68aa3e2c7f0b12ca0fa5ab95076d77fd20 100755
GIT binary patch
delta 10306
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diff --git a/Code-C/main.c b/Code-C/main.c
index 32e7fd7..f48a16a 100644
--- a/Code-C/main.c
+++ b/Code-C/main.c
@@ -9,7 +9,8 @@
 #include "getArray.h"
 
 bool rawDataWriteFlag;
-int nRow = 500;
+int nRowRawData = 500;
+int nRowGR = 150;
 int nCol = 1;
 double freqEch = 250;
 
@@ -43,7 +44,7 @@ void *threadCalculAverage(void *vargp){
         while(queueGetNextE(rawDataQueue) != NULL){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
-            averageThreadFunction(fileName);
+            averageFunction(fileName, NULL);
             remove(fileName);
         }
     }
@@ -57,7 +58,7 @@ void *threadCalculBoth(void *vargp){
             rawDataQueue = queueGetNextE(rawDataQueue);
             fileName = queueGetTabChar(rawDataQueue);
             powerFunction(fileName, NULL);
-            averageThreadFunction(fileName);
+            averageFunction(fileName , NULL);
             remove(fileName);
         }
     }
@@ -67,7 +68,8 @@ void *threadCalculGrowthRate(void * vargp){
     Pqueue rawDataQueue = firstRawDataQueue;
     char* fileName;
     //double pw[nCol-1];
-    double **dataLign = getDoubleArray(2,nCol);
+    double **dataLignPw = getDoubleArray(2,nCol);
+    double **dataLignAv = getDoubleArray(2,nCol);
 
     int i = 0;
     while(rawDataWriteFlag){
@@ -76,18 +78,24 @@ void *threadCalculGrowthRate(void * vargp){
             fileName = queueGetTabChar(rawDataQueue);
             if(i < 2){
                 if(i == 1){
-                    powerFunction(fileName, dataLign);
-                    growthRateFunction(dataLign);
+                    powerFunction(fileName, dataLignPw);
+                    averageFunction(fileName , dataLignAv);
+                    growthRateFunction(dataLignPw , "growthRatePw.csv");
+                    growthRateFunction(dataLignPw,"growthRateAv.csv");
                 }else{
-                    powerFunction(fileName, dataLign);
+                    averageFunction(fileName , dataLignAv);
+                    powerFunction(fileName, dataLignPw);
                 }
                 i++;
             }else{
                 for(int y = 0; y < (nCol-1); y++){
-                    dataLign[0][y] = dataLign[1][y];
+                    dataLignPw[0][y] = dataLignPw[1][y];
+                    dataLignAv[0][y] = dataLignAv[1][y];
                 }
-                powerFunction(fileName, dataLign);
-                growthRateFunction(dataLign);
+                powerFunction(fileName, dataLignPw);
+                averageFunction(fileName , dataLignAv);
+                growthRateFunction(dataLignPw,"growthRatePw.csv");
+                growthRateFunction(dataLignPw,"growthRateAv.csv");
             }
             //remove(fileName);
         }
@@ -105,7 +113,7 @@ int main(int argc , char** argv){
     rawDataWriteFlag = true;
 
     period = 1 / freqEch;
-    invTimeBandWidth = 1 /(nRow * period);
+    invTimeBandWidth = 1 /(nRowRawData * period);
     firstRawDataQueue = queueCreateEmpty(); // change this for create empty
 
     pthread_t rawData;
diff --git a/Code-C/power.c b/Code-C/power.c
index 6fd69d1..ea62528 100644
--- a/Code-C/power.c
+++ b/Code-C/power.c
@@ -11,17 +11,15 @@
  * @param powerArray array where results are stocked
  */
 void powerCalculation(long **p, double powerArray[]){
-    printf("data in pw : \n");
     for(int i = 0; i < nCol; i++){
         int j = 0;
         powerArray[i] = 0;
 
-        while(j < nRow){
-            printf("\np[%d,%d] = %d\npwArray[%d] = %lf\n" , j,i,p[j][i+1],i,powerArray[i]);
+        while(j < nRowRawData){
             powerArray[i] += pow(p[j][i+1],2);
             j++;
         }
-        powerArray[i] /= nRow;
+        powerArray[i] /= nRowRawData;
     }
 
 }
@@ -33,7 +31,7 @@ void powerCalculation(long **p, double powerArray[]){
  * @param N number of rows in the file
  * @param M number of columns in the file
  */
-void powerFunction(char* rawDataFileName, double *pw[]){
+void powerFunction(char* rawDataFileName, double **pw){
     long **p = getRawDataArray(rawDataFileName);
     double pww[nCol-1];
     if(p !=NULL){
@@ -42,8 +40,8 @@ void powerFunction(char* rawDataFileName, double *pw[]){
             appendDataInFile("powerData.csv",pww,nCol-1);
         }else{
             powerCalculation(p,pw[1]);
-            appendDataInFile("powerData.csv",*pw,nCol-1);
+            appendDataInFile("powerData.csv",pw[1],nCol-1);
         }
-        freeArray(p,nRow);
+        freeArray(p,nRowRawData);
     }
 }
\ No newline at end of file
diff --git a/Code-C/simulateFlux.c b/Code-C/simulateFlux.c
index 9c0fbd9..c0183af 100644
--- a/Code-C/simulateFlux.c
+++ b/Code-C/simulateFlux.c
@@ -151,7 +151,7 @@ void *threadSimulateFlux(void *vargp){
     FILE *rawDataFile = fopen(fileName,"w+");
 
     while(writeOneRawData(rawDataFile)){
-        if(cptData == nRow){
+        if(cptData == nRowRawData){
             fclose(rawDataFile);
             cptData = 0;
             cptFile++;

From e06c7602e0dade3bd0d2e88e88cacaab8de6f9ea Mon Sep 17 00:00:00 2001
From: "quentin.perret" <quentinprrt33@gmail.com>
Date: Fri, 17 Jun 2022 17:38:53 +0200
Subject: [PATCH 5/5] add timeFile + ignore last values

---
 Code-C/Makefile            |   2 +-
 Code-C/average.c           |   1 +
 Code-C/getArray.c          |   2 +-
 Code-C/initialParameters.h |   4 +-
 Code-C/main                | Bin 42008 -> 46784 bytes
 Code-C/main.c              |   6 ++-
 Code-C/simulateFlux.c      |  74 +++++++++++++++++++++----------------
 7 files changed, 54 insertions(+), 35 deletions(-)

diff --git a/Code-C/Makefile b/Code-C/Makefile
index 44a0a3d..d9cfeda 100644
--- a/Code-C/Makefile
+++ b/Code-C/Makefile
@@ -1,5 +1,5 @@
 CC = gcc
 
 all: 
-	$(CC) -g fileGestion.c getArray.c average.c growthRate.c power.c queue.c simulateFlux.c main.c -lm -lpthread -o main 
+	$(CC) -g -Wall fileGestion.c getArray.c average.c growthRate.c power.c queue.c simulateFlux.c main.c -lm -lpthread -o main 
 	./main < ../02400031.TXT
\ No newline at end of file
diff --git a/Code-C/average.c b/Code-C/average.c
index 8fef657..317acd9 100644
--- a/Code-C/average.c
+++ b/Code-C/average.c
@@ -17,6 +17,7 @@ void averageCalculation(long **p, double averageArray[]){
             averageArray[i] += p[i][j];
             j++;
         }
+        //printf("%f , %f\n", averageArray[i] , averageArray[i] / nRowRawData);
         averageArray[i] /= nRowRawData;
     }
 }
diff --git a/Code-C/getArray.c b/Code-C/getArray.c
index f8c05ef..bdc7a79 100644
--- a/Code-C/getArray.c
+++ b/Code-C/getArray.c
@@ -53,7 +53,7 @@ void printArrayData(long** p, int N, int M) {
     for(i = 0 ; i < N ; i++){
         printf("line n°%d : " , i);
         for(int j = 0 ; j < M ; j++){
-            printf("%d , " , p[i][j]);
+            printf("%ld , " , p[i][j]);
             if(j==(M-1)) printf("\n");
         }
     }
diff --git a/Code-C/initialParameters.h b/Code-C/initialParameters.h
index 5403af0..12d1e41 100644
--- a/Code-C/initialParameters.h
+++ b/Code-C/initialParameters.h
@@ -6,9 +6,11 @@ extern int nRowRawData;
 extern int nRowGR;
 extern int nCol;
 extern double freqEch;
+extern int nbRowBinFile;
+extern int nbRowIgnore;
 
 extern int cptFile;
-
+extern int cptValue;
 extern double period;
 extern double invTimeBandWidth;
 
diff --git a/Code-C/main b/Code-C/main
index d9efec68aa3e2c7f0b12ca0fa5ab95076d77fd20..e87cfdbeb8ec346c128f09a750fee30663244d1b 100755
GIT binary patch
delta 14879
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diff --git a/Code-C/main.c b/Code-C/main.c
index f48a16a..5872b31 100644
--- a/Code-C/main.c
+++ b/Code-C/main.c
@@ -14,12 +14,16 @@ int nRowGR = 150;
 int nCol = 1;
 double freqEch = 250;
 
+int nbRowBinFile = 900011;
+int nbRowIgnore = 19;
+
 Pqueue firstRawDataQueue;
 //Captor                     1    2    3     4     5     6    7     8
 bool selectionCaptors[] = {true,false,true,false,false,false,true,false};
 
 int cptData = 0; 
 int cptFile = 1;
+int cptValue = 0;
 
 double period = 0;
 double invTimeBandWidth = 0;
@@ -97,7 +101,7 @@ void *threadCalculGrowthRate(void * vargp){
                 growthRateFunction(dataLignPw,"growthRatePw.csv");
                 growthRateFunction(dataLignPw,"growthRateAv.csv");
             }
-            //remove(fileName);
+            remove(fileName);
         }
     }
 }
diff --git a/Code-C/simulateFlux.c b/Code-C/simulateFlux.c
index c0183af..e19d0a5 100644
--- a/Code-C/simulateFlux.c
+++ b/Code-C/simulateFlux.c
@@ -93,6 +93,7 @@ int lastIndexCaptor(){
     }
     return lastIndex;
 }
+
 /**
  * @brief write one lign of rawData in the file @param rawDataFile (simulate of freq of the Vegetal Signals Captor)
  * 
@@ -108,40 +109,51 @@ bool writeOneRawData(FILE *rawDataFile){
     quartet value;
 
     if(fread(&buff, 26, 1, stdin)) {
-        fprintf(rawDataFile , "%d,", millis());
-        if (strncmp(buff, "#################\n", (size_t)18) == 0) {
-            if (!(fread(&buff2, 18, 1, stdin))) {
-                fprintf(stderr, "Erreur lecture après ###...#");
-            } else {
-                strncpy(buff, &buff[18], 8);
-                strncpy(&buff[8], buff2, 18);
+        //printf("%d\n",cptValue);
+        if(cptValue < nbRowBinFile - nbRowIgnore){
+            FILE *timeFile = fopen("timeFile.csv" , "a+");
+            fprintf(timeFile , "%ld\n", millis());
+            fclose(timeFile);
+            fprintf(rawDataFile , "%ld,", millis());
+            if (strncmp(buff, "#################\n", (size_t)18) == 0) {
+                if (!(fread(&buff2, 18, 1, stdin))) {
+                    fprintf(stderr, "Erreur lecture après ###...#");
+                } else {
+                    strncpy(buff, &buff[18], 8);
+                    strncpy(&buff[8], buff2, 18);
+                }
             }
-        }
-        int lastIndex = lastIndexCaptor();
-        for (int i = 1; i < 9; i++){
-            if(selectionCaptors[i-1]){
-                value.octet1 = buff[3*i+1];
-                value.octet2 = buff[3*i+2];
-                value.octet3 = buff[3*i+3];
-                value.octet4 = 0;
-                
-                valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
-                memcpy(&values[i], &valbin[i], sizeof(uint32_t));
+            int lastIndex = lastIndexCaptor();
+            for (int i = 1; i < 9; i++){
+                if(selectionCaptors[i-1]){
+                    value.octet1 = buff[3*i+1];
+                    value.octet2 = buff[3*i+2];
+                    value.octet3 = buff[3*i+3];
+                    value.octet4 = 0;
+                    
+                    valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
+                    memcpy(&values[i], &valbin[i], sizeof(uint32_t));
+                    FILE* allRawDataFile = fopen("AllRawData.csv" , "a+");
+                    if(i-1==lastIndex){
+                        fprintf(rawDataFile, "%d\n", values[i]/256);
+                        fprintf(allRawDataFile, "%d\n", values[i]/256);
+                    }
+                    else{
+                        fprintf(rawDataFile, "%d,", values[i]/256);
+                        fprintf(allRawDataFile, "%d,", values[i]/256);
+                    }
+                    fclose(allRawDataFile); 
+                }
+            }
+        cptData++;
+        //sleep(0.004); //simul freq here
 
-                if(i-1==lastIndex){
-                    fprintf(rawDataFile, "%d\n", values[i]/256);
-                }
-                else{
-                    fprintf(rawDataFile, "%d,", values[i]/256);
-                }
-            }
+        cptValue++;
+        return true;
+        } 
+        else {
+            return false;
         }
-    cptData++;
-    //sleep(0.004); //simul freq here
-    return true;
-    } 
-    else {
-        return false;
     }
 }