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Aurélien Gauthier 2022-06-17 17:45:03 +02:00
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@echo "... simulateFlux.s"
.PHONY : help
#=============================================================================
# Special targets to cleanup operation of make.
# Special rule to run CMake to check the build system integrity.
# No rule that depends on this can have commands that come from listfiles
# because they might be regenerated.
cmake_check_build_system:
$(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 0
.PHONY : cmake_check_build_system

23
Code-C/average.c
View file

@ -13,12 +13,12 @@ void averageCalculation(long **p, double averageArray[]){
for(int i = 1; i < nCol; i++){ for(int i = 1; i < nCol; i++){
int j = 0; int j = 0;
averageArray[i] = 0; averageArray[i] = 0;
while(j < nRow -1){ while(j < nRowRawData){
averageArray[i] += p[i][j]; averageArray[i] += p[i][j];
j++; j++;
} }
averageArray[i] /= nRow; //printf("%f , %f\n", averageArray[i] , averageArray[i] / nRowRawData);
//printf("%f\n", powerArray[i]); averageArray[i] /= nRowRawData;
} }
} }
@ -27,12 +27,19 @@ void averageCalculation(long **p, double averageArray[]){
* *
* @param rawDataFileName name of the raw data file to use to realize the calcul * @param rawDataFileName name of the raw data file to use to realize the calcul
*/ */
void averageThreadFunction(char* rawDataFileName){ void averageFunction(char* rawDataFileName , double **aver){
long **p = getRawDataArray(rawDataFileName); long **p = getRawDataArray(rawDataFileName);
double aver[nCol -1]; double averN[nCol -1];
if(p !=NULL){ if(p !=NULL){
averageCalculation(p,aver); if(p !=NULL){
appendDataInFile("averageData.csv",aver,nCol-1); if(aver == NULL){
freeArray(p,nRow); averageCalculation(p,averN);
appendDataInFile("averageData.csv",averN,nCol-1);
}else{
averageCalculation(p,aver[1]);
appendDataInFile("averageData.csv",aver[1],nCol-1);
}
freeArray(p,nRowRawData);
}
} }
} }

2
Code-C/average.h
View file

@ -1,4 +1,4 @@
#include <math.h> #include <math.h>
#include <stdbool.h> #include <stdbool.h>
void averageThreadFunction(char* rawDataFileName); void averageFunction(char* rawDataFileName , double **aver);

19
Code-C/getArray.c
View file

@ -3,7 +3,7 @@
#include "initialParameters.h" #include "initialParameters.h"
//#include <string.h> //#include <string.h>
long **get(int N, int M) /* Allocate the array */ long **getlongArray(int N, int M) /* Allocate the array */
{ {
/* Check if allocation succeeded. (check for NULL pointer) */ /* Check if allocation succeeded. (check for NULL pointer) */
int i; int i;
@ -14,6 +14,17 @@ long **get(int N, int M) /* Allocate the array */
return array; return array;
} }
double **getDoubleArray(int N, int M) /* Allocate the array */
{
/* Check if allocation succeeded. (check for NULL pointer) */
int i;
double **array;
array = (double **) malloc(N*sizeof(double *));
for(i = 0 ; i < N ; i++)
array[i] = (double *) malloc( M*sizeof(double));
return array;
}
void fillArrayWithRawData(char *rawDataFileName,long** p, int N, int M) { void fillArrayWithRawData(char *rawDataFileName,long** p, int N, int M) {
int i, j; int i, j;
char *buffer; char *buffer;
@ -42,7 +53,7 @@ void printArrayData(long** p, int N, int M) {
for(i = 0 ; i < N ; i++){ for(i = 0 ; i < N ; i++){
printf("line n°%d : " , i); printf("line n°%d : " , i);
for(int j = 0 ; j < M ; j++){ for(int j = 0 ; j < M ; j++){
printf("%d , " , p[i][j]); printf("%ld , " , p[i][j]);
if(j==(M-1)) printf("\n"); if(j==(M-1)) printf("\n");
} }
} }
@ -86,8 +97,8 @@ void freeArray(long **p, int N) {
*/ */
long **getRawDataArray(char* rawDataFileName){ long **getRawDataArray(char* rawDataFileName){
long **p; long **p;
p = get(nRow, nCol); p = getlongArray(nRowRawData, nCol);
fillArrayWithRawData(rawDataFileName,p ,nRow, nCol); fillArrayWithRawData(rawDataFileName,p ,nRowRawData, nCol);
//if(checkArrayFullyFill(p,nRow)){ //if(checkArrayFullyFill(p,nRow)){
//clearRawData(N); //clearRawData(N);
return p; return p;

1
Code-C/getArray.h
View file

@ -9,3 +9,4 @@ long **getRawDataArray(char *rawDataFileName);
void printArrayData(long** p, int N, int M); void printArrayData(long** p, int N, int M);
void freeArray(long **p, int N); void freeArray(long **p, int N);
bool checkArrayFullyFill(long **p, int N ); bool checkArrayFullyFill(long **p, int N );
double **getDoubleArray(int N, int M);

28
Code-C/growthRate.c
View file

@ -9,16 +9,28 @@
* @param gRateArray array that contaigns results of the growth ratecalculation * @param gRateArray array that contaigns results of the growth ratecalculation
*/ */
void growthRateCalculation(double **dataArray , double *gRateArray){ void growthRateCalculation(double **dataArray , double *gRateArray){
double gRate = 0;
for(int i = 0 ; i < nCol-1 ; i++){ for(int i = 0 ; i < nCol-1 ; i++){
gRate = (dataArray[1][i] - dataArray[2][i]) / period; gRateArray[i] = (dataArray[0][i] - dataArray[1][i]) / period;
} }
} }
/**
* @brief calcul then print differentiate in csv
*
* @param dataLign
*/
void growthRateFunction(double **dataLign , char* fileName){
double gRateArray[nCol-1];
growthRateCalculation(dataLign , gRateArray);
appendDataInFile(fileName,gRateArray , nCol-1);
}
void growthRateFunction(double *dataLign){ void sumColArray(long **p, double res[] , int N , int M){
double **dataArray; for(int i = 1; i < M; i++){
//initialization + fill int j = 0;
double gRateArray[nCol-1]; res[i] = 0;
growthRateCalculation(dataArray , gRateArray); while(j < N){
appendDataInFile("growthRate.csv",gRateArray , nCol-1); res[i] += p[i][j];
j++;
}
}
} }

2
Code-C/growthRate.h
View file

@ -1,4 +1,4 @@
#include <math.h> #include <math.h>
#include <stdbool.h> #include <stdbool.h>
void growthRateFunction(double *dataLign); void growthRateFunction(double **dataLign , char* fileName);

7
Code-C/initialParameters.h
View file

@ -2,12 +2,15 @@
#include "queue.h" #include "queue.h"
extern bool rawDataWriteFlag; extern bool rawDataWriteFlag;
extern int nRow; extern int nRowRawData;
extern int nRowGR;
extern int nCol; extern int nCol;
extern double freqEch; extern double freqEch;
extern int nbRowBinFile;
extern int nbRowIgnore;
extern int cptFile; extern int cptFile;
extern int cptValue;
extern double period; extern double period;
extern double invTimeBandWidth; extern double invTimeBandWidth;

BIN
Code-C/main Executable file
View file

Binary file not shown.

43
Code-C/main.c
View file

@ -6,18 +6,24 @@
#include "queue.h" #include "queue.h"
#include "average.h" #include "average.h"
#include "growthRate.h" #include "growthRate.h"
#include "getArray.h"
bool rawDataWriteFlag; bool rawDataWriteFlag;
int nRow = 500; int nRowRawData = 500;
int nRowGR = 150;
int nCol = 1; int nCol = 1;
double freqEch = 250; double freqEch = 250;
Pqueue firstRawDataQueue; int nbRowBinFile = 900011;
int nbRowIgnore = 19;
Pqueue firstRawDataQueue;
//Captor 1 2 3 4 5 6 7 8
bool selectionCaptors[] = {true,false,true,false,false,false,true,false}; bool selectionCaptors[] = {true,false,true,false,false,false,true,false};
int cptData = 0; int cptData = 0;
int cptFile = 1; int cptFile = 1;
int cptValue = 0;
double period = 0; double period = 0;
double invTimeBandWidth = 0; double invTimeBandWidth = 0;
@ -42,7 +48,7 @@ void *threadCalculAverage(void *vargp){
while(queueGetNextE(rawDataQueue) != NULL){ while(queueGetNextE(rawDataQueue) != NULL){
rawDataQueue = queueGetNextE(rawDataQueue); rawDataQueue = queueGetNextE(rawDataQueue);
fileName = queueGetTabChar(rawDataQueue); fileName = queueGetTabChar(rawDataQueue);
averageThreadFunction(fileName); averageFunction(fileName, NULL);
remove(fileName); remove(fileName);
} }
} }
@ -56,7 +62,7 @@ void *threadCalculBoth(void *vargp){
rawDataQueue = queueGetNextE(rawDataQueue); rawDataQueue = queueGetNextE(rawDataQueue);
fileName = queueGetTabChar(rawDataQueue); fileName = queueGetTabChar(rawDataQueue);
powerFunction(fileName, NULL); powerFunction(fileName, NULL);
averageThreadFunction(fileName); averageFunction(fileName , NULL);
remove(fileName); remove(fileName);
} }
} }
@ -66,17 +72,17 @@ void *threadCalculGrowthRate(void * vargp){
Pqueue rawDataQueue = firstRawDataQueue; Pqueue rawDataQueue = firstRawDataQueue;
char* fileName; char* fileName;
//double pw[nCol-1]; //double pw[nCol-1];
double *dataLign[2][nCol-1]; double **dataLignPw = getDoubleArray(2,nCol);
double **dataLignAv = getDoubleArray(2,nCol);
int i = 0; int i = 0;
while(rawDataWriteFlag){ while(rawDataWriteFlag){
//add case first file traitement
//(possibility 1: call twice powerfunction , following while strat after 2 file encountered)
//(posibilty 2 : initialiaze with a 0-fill array, move ligns for first encounter then let the following whil e do the job)
while(queueGetNextE(rawDataQueue) != NULL){ while(queueGetNextE(rawDataQueue) != NULL){
rawDataQueue = queueGetNextE(rawDataQueue); rawDataQueue = queueGetNextE(rawDataQueue);
fileName = queueGetTabChar(rawDataQueue); fileName = queueGetTabChar(rawDataQueue);
if(i < 2){ if(i < 2){
if(i == 1){ if(i == 1){
<<<<<<< HEAD
printf("zedfghjio\n"); printf("zedfghjio\n");
powerFunction(fileName, dataLign[1]); powerFunction(fileName, dataLign[1]);
growthRateFunction(**dataLign); growthRateFunction(**dataLign);
@ -84,16 +90,33 @@ void *threadCalculGrowthRate(void * vargp){
printf("zedfghjio\n"); printf("zedfghjio\n");
powerFunction(fileName, dataLign[0]); powerFunction(fileName, dataLign[0]);
=======
powerFunction(fileName, dataLignPw);
averageFunction(fileName , dataLignAv);
growthRateFunction(dataLignPw , "growthRatePw.csv");
growthRateFunction(dataLignPw,"growthRateAv.csv");
}else{
averageFunction(fileName , dataLignAv);
powerFunction(fileName, dataLignPw);
>>>>>>> e06c7602e0dade3bd0d2e88e88cacaab8de6f9ea
} }
i++; i++;
}else{ }else{
for(int y = 0; y < (nCol-1); y++){ for(int y = 0; y < (nCol-1); y++){
dataLign[0][y] = dataLign[1][y]; dataLignPw[0][y] = dataLignPw[1][y];
dataLignAv[0][y] = dataLignAv[1][y];
} }
<<<<<<< HEAD
printf("zedfghjio\n"); printf("zedfghjio\n");
powerFunction(fileName, dataLign[1]); powerFunction(fileName, dataLign[1]);
growthRateFunction(**dataLign); growthRateFunction(**dataLign);
=======
powerFunction(fileName, dataLignPw);
averageFunction(fileName , dataLignAv);
growthRateFunction(dataLignPw,"growthRatePw.csv");
growthRateFunction(dataLignPw,"growthRateAv.csv");
>>>>>>> e06c7602e0dade3bd0d2e88e88cacaab8de6f9ea
} }
remove(fileName); remove(fileName);
} }
@ -111,7 +134,7 @@ int main(int argc , char** argv){
rawDataWriteFlag = true; rawDataWriteFlag = true;
period = 1 / freqEch; period = 1 / freqEch;
invTimeBandWidth = 1 /(nRow * period); invTimeBandWidth = 1 /(nRowRawData * period);
firstRawDataQueue = queueCreateEmpty(); // change this for create empty firstRawDataQueue = queueCreateEmpty(); // change this for create empty
pthread_t rawData; pthread_t rawData;

17
Code-C/power.c
View file

@ -11,16 +11,17 @@
* @param powerArray array where results are stocked * @param powerArray array where results are stocked
*/ */
void powerCalculation(long **p, double powerArray[]){ void powerCalculation(long **p, double powerArray[]){
for(int i = 1; i < nCol; i++){ for(int i = 0; i < nCol; i++){
int j = 0; int j = 0;
powerArray[i] = 0; powerArray[i] = 0;
while(j < nRow-1){
double aire = ( pow(p[j][i],2) + pow(p[j+1][i],2) ) / 2 * period; while(j < nRowRawData){
powerArray[i] += aire; powerArray[i] += pow(p[j][i+1],2);
j++; j++;
} }
powerArray[i] *= invTimeBandWidth; powerArray[i] /= nRowRawData;
} }
} }
/** /**
@ -39,9 +40,9 @@ void powerFunction(char* rawDataFileName, double **pw){
powerCalculation(p,pww); powerCalculation(p,pww);
appendDataInFile("powerData.csv",pww,nCol-1); appendDataInFile("powerData.csv",pww,nCol-1);
}else{ }else{
powerCalculation(p,*pw); powerCalculation(p,pw[1]);
appendDataInFile("powerData.csv",*pw,nCol-1); appendDataInFile("powerData.csv",pw[1],nCol-1);
} }
freeArray(p,nRow); freeArray(p,nRowRawData);
} }
} }

2
Code-C/power.h
View file

@ -1,4 +1,4 @@
#include <math.h> #include <math.h>
#include <stdbool.h> #include <stdbool.h>
void powerFunction(char* rawDataFileName, double **pw); void powerFunction(char* rawDataFileName, double *pw[]);

22
Code-C/simulateFlux.c
View file

@ -93,6 +93,7 @@ int lastIndexCaptor(){
} }
return lastIndex; return lastIndex;
} }
/** /**
* @brief write one lign of rawData in the file @param rawDataFile (simulate of freq of the Vegetal Signals Captor) * @brief write one lign of rawData in the file @param rawDataFile (simulate of freq of the Vegetal Signals Captor)
* *
@ -108,7 +109,12 @@ bool writeOneRawData(FILE *rawDataFile){
quartet value; quartet value;
if(fread(&buff, 26, 1, stdin)) { if(fread(&buff, 26, 1, stdin)) {
fprintf(rawDataFile , "%d,", millis()); //printf("%d\n",cptValue);
if(cptValue < nbRowBinFile - nbRowIgnore){
FILE *timeFile = fopen("timeFile.csv" , "a+");
fprintf(timeFile , "%ld\n", millis());
fclose(timeFile);
fprintf(rawDataFile , "%ld,", millis());
if (strncmp(buff, "#################\n", (size_t)18) == 0) { if (strncmp(buff, "#################\n", (size_t)18) == 0) {
if (!(fread(&buff2, 18, 1, stdin))) { if (!(fread(&buff2, 18, 1, stdin))) {
fprintf(stderr, "Erreur lecture après ###...#"); fprintf(stderr, "Erreur lecture après ###...#");
@ -119,7 +125,7 @@ bool writeOneRawData(FILE *rawDataFile){
} }
int lastIndex = lastIndexCaptor(); int lastIndex = lastIndexCaptor();
for (int i = 1; i < 9; i++){ for (int i = 1; i < 9; i++){
if(selectionCaptors[i]){ if(selectionCaptors[i-1]){
value.octet1 = buff[3*i+1]; value.octet1 = buff[3*i+1];
value.octet2 = buff[3*i+2]; value.octet2 = buff[3*i+2];
value.octet3 = buff[3*i+3]; value.octet3 = buff[3*i+3];
@ -127,23 +133,29 @@ bool writeOneRawData(FILE *rawDataFile){
valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256; valbin[i] = buff[3*i+1]*256*256*256 + buff[3*i+2]*256*256 + buff[3*i+3]*256;
memcpy(&values[i], &valbin[i], sizeof(uint32_t)); memcpy(&values[i], &valbin[i], sizeof(uint32_t));
FILE* allRawDataFile = fopen("AllRawData.csv" , "a+");
if(i==lastIndex){ if(i-1==lastIndex){
fprintf(rawDataFile, "%d\n", values[i]/256); fprintf(rawDataFile, "%d\n", values[i]/256);
fprintf(allRawDataFile, "%d\n", values[i]/256);
} }
else{ else{
fprintf(rawDataFile, "%d,", values[i]/256); fprintf(rawDataFile, "%d,", values[i]/256);
fprintf(allRawDataFile, "%d,", values[i]/256);
} }
fclose(allRawDataFile);
} }
} }
cptData++; cptData++;
//sleep(0.004); //simul freq here //sleep(0.004); //simul freq here
cptValue++;
return true; return true;
} }
else { else {
return false; return false;
} }
} }
}
void *threadSimulateFlux(void *vargp){ void *threadSimulateFlux(void *vargp){
@ -151,7 +163,7 @@ void *threadSimulateFlux(void *vargp){
FILE *rawDataFile = fopen(fileName,"w+"); FILE *rawDataFile = fopen(fileName,"w+");
while(writeOneRawData(rawDataFile)){ while(writeOneRawData(rawDataFile)){
if(cptData == nRow){ if(cptData == nRowRawData){
fclose(rawDataFile); fclose(rawDataFile);
cptData = 0; cptData = 0;
cptFile++; cptFile++;